HAPLOGROUP OF THE MODERN LINES OF HYBRID PIGS


Download the article 

DOI: 10.37143/0371-4365-2022-77-78-02

Y. O. Budakva,graduate student, laboratories. genetics
ORCID:https://orcid.org/0000-0001-5941-1953
E-mail:budakvayelyzaveta@gmail.com
Institute of Pig Breeding and agroindustrial production NAAS, Shvedska Mohyla Str., 1, Poltava, Ukraine, 36013
K. F. Pochernyaev, Doctor of Agricultural Sciences, Deputy Director of Research, Production and Finance activity
ORCID:https://orcid.org/0000-0001-9973-6429
E-mail:k.f.pochernyaev@gmail.com
Institute of Pig Breeding and agroindustrial production NAAS, Shvedska Mohyla Str., 1, Poltava, Ukraine, 36013
S. V. Lobchenko, candidate of agricultural sciences, head of the reproductive physiology laboratory
ORCID:https://orcid.org/0000-0001-9469-6202
E-mail:svitlife@ukr.net
Institute of Pig Breeding and agroindustrial production NAAS, Shvedska Mohyla Str., 1, Poltava, Ukraine, 36013
T. M. Borzhak N. with. lab scientific research on intellectual property and innovation marketing,
ORCID:https://orcid.org/0000-0002-2836-627X
E-mail:tania96753@gmail.com
Institute of Pig Breeding and agroindustrial production NAAS, Shvedska Mohyla Str., 1, Poltava, Ukraine, 36013

Abstract

The aim. The study was conducted to characterize the genetic diversity of hybrid pigs (Large White×Landrace)×Maxgro in Ukraine. Method. DNA isolation was performed from bristle samples using Chelex-100 ion exchange resin and epithelial tissue from the ear of pigs by the sorbent method. The results. The results of DNA typing of hybrid pigs (Large White×Landrace)×Maxgro from LLC "Hlobynskyi Svynocomplex" are presented. Using PCR-RFLP analysis of the polymorphism of the D-loop section, 7 mitochondrial haplotypes were determined – N, C, O, G, D, E, K. In the studied sample of pigs (n=50), the concentration of haplotypes as a percentage is determined. It was found that mitochondrial haplotypes C (24 %) were found to be characteristic of Landrace pigs, Hampshire, Wales, a wild pig (Ukraine, Poland, France); haplotype O (12%) – inherent in a wild pig and Landrace breed (Sweden); haplotype G (12 %) – peculiar to Wales breed, a wild pig (Italy, France); haplotype N (28%) is characteristic of the Large White breed of pigs, representatives are carriers of the Asian type. It is worth noting that the Asian haplotype N is characteristic of the Asian wild pig and Berkshire breed. The presented data on the hybridization of mitochondrial genomes of Asian and European origin are the basis for the creation of modern lines of hybrid pigs along the maternal line. Haplotype N refers to haplogroup A(D), and haplotypes C, O, G belong to haplogroup E. It is completely uncertain that haplotypes D (10 %), E (6 %), K (8 %) belong to haplogroup A(D). According to the results obtained, haplogroup E in hybrid pigs is dominant, however, it is haplogroup A that is the predecessor of haplogroup E. We assume opinions that pigs of the Large White breed with haplotype N, D, E, K – contain aboriginal genetic resources. Pigs with haplotype D, E, K – are the result of hybridization with European wild boars. Over time, this led to the almost complete disappearance of the primary Middle Eastern ancestors in the nuclear genomes of European domesticated pigs. The speculation that traditional seasonal cattle breeding, annual long-distance migrations that have occurred in the past, and commercial trade in nucleuses explain the observatory pattern of favorable gene flow among hybrid pigs. Conclusions. The results obtained during the study of the mitochondrial genome of hybrid pigs improved the understanding of matrilineal origin and phylogeographic model of distribution of genetic diversity of cross-border pig breeds (Large White×Landrace)×Maxgro in Ukraine. We came to the conclusion that natural selection acts very weakly on the single nucleotide polymorphism that led to the formation of the haplogroup of cross-border breeds of pigs that are found today. The obtained results of the study are evidence that European pig breeds consist of pigs with Asian and non-Asian mitochondria, some of which were formed from closely related maternal ancestors. The work was carried out with the support of the National Academy of Agrarian Sciences of Ukraine 31.01.00.07.F. "To study the pleiotropic effect of genes whose SNPs are used in markerassociated selection of pigs." SR No. 0121U109838.

Key words: hybrid pigs, (Large White×Landrace)×Maxgro, mtDNA, D-loop, haplotype, haplogroup, PCR-PDRF.

REFERENCES

  • 1. Vergara, A. M. C., Martínez A. M., Bermejo J. V. D., Macri M., Nájera P. R. A., Duchi N. A. D., &Vargas P. A. T. (2021). A Matrilineal Study on the Origin and Genetic Relations of the Ecuadorian Pillareño Creole Pig Population through D-Loop Mitochondrial DNA Analysis. Animals, 11(11), 3322. doi: 10.3390/ani11113322
  • 2. Toalombo, P. A., Camacho C. A., Buenaño R., Jiménez S., Navas-González F. J., Landi V., & Delgado J. V. (2019). Efecto socioeconómico sobre las características fanerópticas de gallinas autóctonas de Ecuador. Arch. Zootec., 68(263), 416–421. doi: 10.21071/az.v68i263.4202
  • 3. Kim, K. I., Lee, J. H., Li, K., Zhang, Y. P., Lee, S. S., Gongora, J., & Moran, C. (2002). Phylogenetic relationships of Asian and European pig breeds determined by mitochondrial DNA D-loop sequence polymorphism. Anim Genet, 33(1), 19–25. doi: 10.1046/j.1365-2052.2002.00784.x Свинарство. 2022. Вип. 77–78 Pig Breeeding. 2022. Is. 77–78 32
  • 4. Giuffra, E., Kijas, J. M. H., Amarger, V., Carlborg, Ö., Jeon, J-T., & Andersson, L. (2000). The Origin of the Domestic Pig: Independent Domestication and Subsequent Introgression. Genetics, 154(4), 1785–1791. doi: 10.1093/genetics/154.4.1785
  • 5. Kijas, J. M., & Andersson, L. (2001). A phylogenetic study of the origin of the domestic pig estimated from the near-complete mtDNA genome. J Mol Evol, 52(3), 302–308. doi: 10.1007/s002390010158
  • 6. Wang, Y., Zhang, C., Peng, Y., Cai, X., Hu, X., Bosse, M., & Zhao, Y. (2022). Whole-genome analysis reveals the hybrid formation of Chinese indigenous DHB pig following human migration. Evolutionary Applications, 15(3), 501–514. doi: 10.1111/eva.13366
  • 7. Eizirik, E., & Trindade, F. J. (2021). Genetics and Evolution of Mammalian Coat Pigmentation. Annual Review of Animal Biosciences, 9, 125–148. doi: 10.1146/annurev-animal-022114-110847
  • 8. Ackermann, R. R., Arnold, M. L., Baiz, M. D., Cahill, J. A., Cortés-Ortiz, L., Evans, B. J., Grant, R. B., … & Zinner, D. (2019). Hybridization in human evolution: Insights from other organisms. Evolutionary Anthropology, (28)4, 189–209. doi: 10.1002/evan.21787
  • 9. Korinnyi, S. M., Pochernyaev, K. F., & Balatsky, V. M. (2005). Sherstʹ tvaryn yak zruchnyi obiekt vydilennia DNK dlia analizu za dopomohoiu PLR [Animal fur as a convenient object of DNA isolation for PCR analysis]. Veterinary biotechnology [Veterinary biotechnology], 7, 80–83 [in Ukrainian]. 10. Pocherniayev, K. F. (2016). Genetic structure of Ukrainian Large White pigs, estimated using mitochondrial DNA-markers. Agricultural Science and Practice, 3(1), 61–65. doi: 10.15407/agrisp3.01.061
  • 11. Pochernyaev, K. F., & Berezovskyi, M. D. (2014). Vykorystannia mitokhondrialnykh DNK-markeriv dlia kontroliu dostovirnosti pokhodzhennia henealohichnykh struktur svynomatok [The use of mitochondrial DNA markers to control the reliability of the origin of genealogical structures of sows]. Poltava, 24–27 [in Ukrainian].
  • 12. Pochernyaev, K. F. (2005). Sposib vyznachennia mitokhondrialnykh haplotypiv svynei [Method of determination of mitochondrial haplotypes of pigs: a declaration patent of Ukraine no. A61D7/00 with priority from 16.05.2005]. Ukraine: Base of patents of Ukraine [in Ukrainian].
  • 13. Pochernyaev, K. F. (2017). Novi mozhlyvosti bahatosaitovoho sposobu vyznachennia mitokhondrialnykh haplotypiv svynei [New possibilities of the multi-site method of determination of mitochondrial haplotypes of pigs.]. Svynarstvo [Pig Breeding]. Poltava, 69, 100–108 [in Ukrainian].